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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgtcgattctctcctttctttcctaaaatgcttatgcttcagaaagaagcattcatttttatgtctttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG

Basic information

species Glycine max
transcript GLYMA01G43470.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43470.5 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 7
gttagtt-ttgtcgattctctcctttcttt--cctaaaatgcttatgcttcagaaagaagcattcatttttatgtctttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG
|| |||   | | |||| |    || | ||   ||       |  |  |   ||  |  |        |  ||   ||   |||||||||||| ||||| || |||||||| |||||||||| | ||||||||||||| | ||| ||||  |||||||  ||||| |||||||| ||| ||
gtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346911|gb|BM891799.1|BM891799
EST:     CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA                         CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA
genomic: CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAgttagttttg ... tttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA
EST: gi|209718138|gb|BW657797.1|BW657797
EST:     CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA                         CAATTGTAAGCTTCGGAAAGGTTACCCCTCGAACAAA-GCAAGAAGTTGAA
genomic: CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAgttagttttg ... tttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCT-GAACAAAAGCAAGAAGTTGAA
EST: gi|308097989|gb|HO761160.1|HO761160
EST:     CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA                         CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA
genomic: CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAgttagttttg ... tttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA
EST: gi|193465110|gb|FK432015.1|FK432015
EST:     CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA                         CAATTTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAA
genomic: CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAgttagttttg ... tttgtttcagCAATT-GTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAA
EST: gi|209718875|gb|BW669062.1|BW669062
EST:     CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGA                         CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA
genomic: CTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGAgttagttttg ... tttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctaaaatgcttatgcttcagaaagaagcattcatttttatgtctttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG
 tcctaaa  putative branch site (score: 2)
                                           tctttgtttc  putative PPT
                              attcatttttatgt  TA-rich tract