1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagatatccattctttgcttgctttgaaattcatgcattttatttctgccaattgttcttagtttttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCCCCAGAAGGTATGGAGTTGAAAAAATGGG
species | Glycine max |
transcript | GLYMA01G43150.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193733135|gb|FK667980.1|FK667980
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: AAAATTGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|254317701|gb|GR826685.1|GR826685
genomic: AAAA-TGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208252523|gb|GE048327.1|GE048327
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|207796768|gb|GD768830.1|GD768830
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193374547|gb|FK341207.1|FK341207
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTACCAAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208185854|gb|GD987043.1|GD987043
genomic: TTACC-AAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|16343086|gb|BI968681.1|BI968681
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193477266|gb|FK443151.1|FK443151
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|22933326|gb|BU550465.1|BU550465
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC NNNGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193358620|gb|FK326660.1|FK326660
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGEST: gi|208256603|gb|GE054058.1|GE054058
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTG
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTTATTCTAACTTGATTGGAAAGAAGTGGGEST: gi|23064464|gb|BU579237.1|BU579237
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCT-AT-C-AACT-GATTGGAAAGAAGTGGG
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGTTCAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208245515|gb|GE047425.1|GE047425
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGEST: gi|33389087|gb|CA852294.1|CA852294
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTG
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208201514|gb|GE000078.1|GE000078
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGACCAEST: gi|193408041|gb|FK374859.1|FK374859
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193710914|gb|FK646925.1|FK646925
genomic: TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGA-GCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|254317168|gb|GR826113.1|GR826113
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TGGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193316912|gb|FK280360.1|FK280360
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: ATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208269415|gb|GE070339.1|GE070339
genomic: ATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAAEST: gi|5342531|gb|AI794815.1|AI794815
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|6724926|gb|AW309325.1|AW309325
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|254317160|gb|GR826105.1|GR826105
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193653853|gb|FK598311.1|FK598311
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGAEST: gi|208094089|gb|GD894514.1|GD894514
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGA
EST: ATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208171339|gb|GD973192.1|GD973192
genomic: ATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208194555|gb|GD988090.1|GD988090
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|14125278|gb|BG789716.1|BG789716
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193368227|gb|FK330043.1|FK330043
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTEST: gi|208178004|gb|GD976459.1|GD976459
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGT
EST: ATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|209712068|gb|BW674215.1|BW674215
genomic: ATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208179910|gb|GD979303.1|GD979303
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: AAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208282276|gb|GE075082.1|GE075082
genomic: AAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193465240|gb|FK430647.1|FK430647
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: GCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|207749597|gb|GD721519.1|GD721519
genomic: GCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: GATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208194466|gb|GD992537.1|GD992537
genomic: GATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193557715|gb|FK512028.1|FK512028
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193413240|gb|FK377321.1|FK377321
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTACTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCEST: gi|208059787|gb|GD858685.1|GD858685
genomic: TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT-CTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATC
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193676875|gb|FK619131.1|FK619131
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
ttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCCCCAGAAGGTATGGAGTTGAAAAAATGGG
ttttaat putative branch site (score: 3)
tttttccccattttcc CT-rich tract
attttcctttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatccattctttgcttgctttgaaattcatgcattttatttctgccaattgttcttagtttttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCCCCAGAAGGTATGGAGTTGAAAAAATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG