Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacttctcttttcttagtctttttttttttttatttcctttgattgtgcactttatagtggaatttattgttactaaatttatgattttgttttatttcatcttgtagGGTGTGTGCTTGCATGCAG

Basic information

species Glycine max
transcript GLYMA01G43010.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295809|gb|FG992620.1|FG992620
EST:     CGACAGGCTTCTCAATTGCTATCTTGTTTGGCTGACTTTGTCTACTGCAC                         GGTGTGTGCTTGCATGCAG
genomic: CGACAGGCTTCTCAATTGCTATCTTGTTTGGCTGACTTTGTCTACTGCACgtaagacttc ... catcttgtagGGTGTGTGCTTGCATGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagtggaatttattgttactaaatttatgattttgttttatttcatcttgtagGGTGTGTGCTTGCATGCAG
                  tactaaa  putative branch site (score: 1)
                                ttttgttttatttc  putative PPT
        aatttattgttactaa  TA-rich tract