1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ccaaccttgcatgcttttattgtcctttttaattgaagttgtcattatgttcttcacaatgttaacttgtagaggaaacttattttgttttcctgtgcagGTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCTATCTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTTCC
species | Glycine max |
transcript | GLYMA01G42940.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAG GTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCEST: gi|151407819|gb|EV277634.1|EV277634
genomic: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGgtatggtgta ... tcctgtgcagGTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
EST: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAG GTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCEST: gi|192315508|gb|FK009688.1|FK009688
genomic: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGgtatggtgta ... tcctgtgcagGTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
EST: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAG GTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
genomic: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGgtatggtgta ... tcctgtgcagGTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
tatgttcttcacaatgttaacttgtagaggaaacttattttgttttcctgtgcagGTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCTATCTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTTCC
tgttaac putative branch site (score: 2)
cttattttgttttcct putative PPT
aaacttattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaccttgcatgcttttattgtcctttttaattgaagttgtcattatgttcttcacaatgttaacttgtagaggaaacttattttgttttcctgtgcagGTGGTTCAAGCATGCCGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCTATCTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - ccttgca
- - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt