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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacgactgctttccagtcacattgcttgacttaaacaatttccatctggcctgtttggaaactctaaacttaatccatttttttttgttttttttaataatgtttgtagGGTGACAAAACATCTTTGCGACACACAGAGATGTCCAATAGATTTGATAACTCCACCTGATGATTGTCATGTCAACTATACACTCTCCTTCTCACTTCAA

Basic information

species Glycine max
transcript GLYMA01G41140.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G47020.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtacgactgctttccagtcacattgcttg-acttaaacaatttccatctggcctgtttggaaactctaaacttaatccatttttttttgttttttttaataatgtttg-tagGGTGACAAAACATCTTTGCGACACACAGAGATGTCCAATAGATTTGATAACTCCACCTGATGATTGTCATGTCAACTATACACTCTCCTTCTCACTTCAA
                   ||| ||| | | |  || |  |||      || |    |||  |||   |    |||| |  || |  ||            || || |||||  ||||| ||  |    ||||| || |   | | ||| ||||||||||| || | ||| || |||||||| |||||||| |||||||| ||||| || ||||| 
----------------gtgagtaacacttcctatacgtttaca----taatttattttgtgaggatgattagtacttgactcaataatt------------aaaaacgtttgacagGGTTACTCAGACCCTTTGTGAGAGCAAAACATGCCCAATAGATTTAATCAGTCCGCCGGATGATTGCCATGTCAATTATACACTATCCTTTTCCCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaaactctaaacttaatccatttttttttgttttttttaataatgtttgtagGGTGACAAAACATCTTTGCGACACACAGAGATGTCCAATAGATTTGATAACTCCACCTGATGATTGTCATGTCAACTATACACTCTCCTTCTCACTTCAA
                                     ttttaat  putative branch site (score: 3)
        tctaaacttaatccat  TA-rich tract