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gtaatcctcaacttcacatgttatgtatttcaaagctatttggttgtttgtcttgggtttgaactaatttgtctttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGGCATATATTCCACTGTGATATTGGGACATGGCCTTTGGAAGATAAATGAC
species | Glycine max |
transcript | GLYMA01G40650.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAA AATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGGEST: gi|13481241|gb|BG510584.1|BG510584
genomic: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAAgtaatcctca ... ttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGG
EST: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAA AATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGGEST: gi|11274513|gb|BF324866.1|BF324866
genomic: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAAgtaatcctca ... ttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGG
EST: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAA AATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGCEST: gi|14991996|gb|BI317669.1|BI317669
genomic: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAAgtaatcctca ... ttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGG
EST: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAA AATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGG
genomic: CACTTCTGGAAGGACTGCTGGCACTATACCTAGGTTTCGAGTGGATCCAAgtaatcctca ... ttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGG
tcaaagctatttggttgtttgtcttgggtttgaactaatttgtctttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGGCATATATTCCACTGTGATATTGGGACATGGCCTTTGGAAGATAAATGAC
aactaat putative branch site (score: 2)
tttgtctttttgttt CT-rich tract
taatttgtcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcctcaacttcacatgttatgtatttcaaagctatttggttgtttgtcttgggtttgaactaatttgtctttttgtttagAATGGTTACGTGACAGACTGATAATATTCTTGCTCCCATTATCACACATGGCATATATTCCACTGTGATATTGGGACATGGCCTTTGGAAGATAAATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA