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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttaattctggtaattaaggaatgaactgagcttttttgtcttcactaatgttctaatcaaagtttgtattttattattctcattcacaagacgtaaattgttaaatacattattcgatggcagAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGTAATTTGATCTCTAAACATAGCAATAGTCAATCATCGAGGAATCACTTCCC

Basic information

species Glycine max
transcript GLYMA01G39520.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346682|gb|BM891562.1|BM891562
EST:     ATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATG                         AATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGTA
genomic: ATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGgtgagcttaa ... tcgatggcagAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattattctcattcacaagacgtaaattgttaaatacattattcgatggcagAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGTAATTTGATCTCTAAACATAGCAATAGTCAATCATCGAGGAATCACTTCCC
                         taaattgttaaataca  TA-rich tract