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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttcctccctgtgattgttattcatgctgaatttaatatgctcgctgttgaattcacatttagttgtataaataatttgtcaaaacttatgcatgctatacactttttaattatcgataatttaccatttttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAG

Basic information

species Glycine max
transcript GLYMA01G39330.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183033|gb|HO028296.1|HO028296
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
EST: gi|192326076|gb|FK016228.1|FK016228
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAA-TGCATCGTGGGAATTGGTTTCATCACTTTTGCTAG
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGG-AATTGGTTTCATCACTTTTGCTAG
EST: gi|193362647|gb|FK327389.1|FK327389
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
EST: gi|254318602|gb|GR832770.1|GR832770
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgcatgctatacactttttaattatcgataatttaccatttttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAG
                   ttttaat  putative branch site (score: 3)
                                   tttaccatttttccc  putative PPT
                  tttttaattatcgata  TA-rich tract