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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggtcacctgcatgagatccgtgtctaactagtataagaaatctctaccagatatttgcgttaccattataaaaattactagttcctttttttttctttcagaaattactaattcaatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtagGGACATCAAAGGAGCTAACTTGCTTGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC

Basic information

species Glycine max
transcript GLYMA01G39070.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39070.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtactggtcacctgcatgagatccgtgtctaactagtataagaaatctctaccagatatttgcgttaccattataaaaattactagttcctttttttttctttcagaaattactaattcaatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtagGGACATCAAAGGAGCTAACTTGCTTGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC
                                                              | ||     | |    |||  || |  ||||| | |  | |    ||||  |  | |  |||| |  ||  |  |||||  | ||  ||      |  | |   | | ||| ||||||||||| ||||| |||||||||||| |  |||| ||||||||||||||||||||||||||| | || || 
--------------------------------------------------------------cattgtgtctttggggatt--taatatcttttatctagtgt----aatttttcctcctctttgaa--tatcaattctgacatgtaagttcgaccatcctat---tttatagAGACATCAAAGGGGCTAATTTGCTTGTTGATGCATCTGGAGTTGTTAAGCTTGCTGACTTTGGGATGTCTAAACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtagGGACATCAAAGGAGCTAACTTGCTTGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC
                 atctgat  putative branch site (score: 4)
                         tatatattttcttttg  TA-rich tract