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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatctaggtcttatttggataaacttttcaataaacacttgtaagagaaaaaaaaataagaatataaaatgaaataagtttctttcaacttaaaattagcttatgcattgagttgctgcataacaatcataaaatactatggacattcattggattttgactgagtacatgattgtatgcagTATGCTCAAAGCTCCTCATCAAACATAATCAGTCTCGCCGAACATCTTGGTACACGAATATCTGATCATGTTCCAGTGGCACCTAATAAACTTTCTGAGG

Basic information

species Glycine max
transcript GLYMA01G38680.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 3'ss of exon 7
gtaattatctaggtcttatttggataaacttttcaataaacacttgtaagagaaaaaaaaataagaatataaaatgaaataagtttctttcaacttaaaattagcttatgcattgagttgctgcataacaatcataaaatactatggacattcattggattttgactgagtacatgattgtatgcagTATGCTCAAAGCTCCTCATCAAACATAATCAGTCTCGCCGAACATCTTGGTACACGAATATCTGATCATGTTCCAGTGGCACCTAATAAACTTTCTGAGG
                                                                              |   ||| |    | | ||  |  |      |   || |  |||| ||        |   ||  |||||  ||||  || ||| | ||| |||      || | | ||||||||||| |   | || |||||  |||||||||| || || |||||||| || || || |||||||||||||||| | ||||||| | | |||||||||
--------------------------------------------------------------------------caccagctgttacaacgaccataggaaaaatgctggtgatgggaagctgtatt-------ttggatg-tatggttattc--tgtattgtaactcagtg---acttctgtacagTATGCTCAGAATACTTCTTCAAATGTAATCAGTCTGGCAGAGCATCTTGGAACCCGTATTTCTGATCATGTTCCAGAGACACCTAACAGAATTTCTGAGG

upper sequence: GLYMA01G38680.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 4
gtaattatctaggtcttatttggataaacttttcaataaacacttgtaagagaaaaaaaaataagaatataaaatgaaataagtttctttcaacttaaaattagcttatgcattgagttgctgcataacaatcataaaatactatggacattcattggattttgactgagtacatgattgtatgcagTATGCTCAAAGCTCCTCATCAAACATAATCAGTCTCGCCGAACATCTTGGTACACGAATATCTGATCATGTTCCAGTGGCACCTAATAAACTTTCTGAGG
                                                                              |   ||| |    | | ||  |  |      |   || |  |||| ||        |   ||  |||||  ||||  || ||| | ||  |||      || | | ||||||||||| |   | || |||||  |||||||||| || || |||||||| || || || |||||||||||||||| | ||||||| | | |||||||||
--------------------------------------------------------------------------caccagctgttacaacgaccataggaaaaatgctggtgatgggaagctgtatt-------ttggatg-tatggttattc--tgtattgtaacccagtg---acttctgtacagTATGCTCAGAATACTTCTTCAAATGTAATCAGTCTGGCAGAGCATCTTGGAACCCGTATTTCTGATCATGTTCCAGAGACACCTAACAGAATTTCTGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaaatactatggacattcattggattttgactgagtacatgattgtatgcagTATGCTCAAAGCTCCTCATCAAACATAATCAGTCTCGCCGAACATCTTGGTACACGAATATCTGATCATGTTCCAGTGGCACCTAATAAACTTTCTGAGG
                           ttttgac  putative branch site (score: 3)
     aatactat  TA-rich tract