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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttcttatacaatctactttcataatctacagtgcttgcatatgacattccccatatataattcaatttcttttatgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTATTCAGCCATTAACATGATGCAGAAAGTTTATATTTTTG

Basic information

species Glycine max
transcript GLYMA01G38640.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g08400.2 (Oryza sativa), 3'ss of exon 10
----gtatccttcttatacaatctactttcat---aatctacagtgcttg---catatgacattccccatatataattcaatttctt-ttatgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTATTCAGCCATTAACATGATGCAGAAAGTTTATATTTTTG
     ||| |   ||||    | |  | ||||     ||| | ||  | |   |  ||||  | |    |   || || ||| | || || |   |  || ||||| ||||| |||||  |||||||||||||||||||||| ||| |  | |||||||                                         
tacaatatgcaaattatttgttgtgttatcatttggttcttctgtattgggacctcatgaagtacattgtcggtattttaatgtgttattgttcttgcagATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAG-----------------------------------------

upper sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G017845_T01 (Zea mays), 3'ss of exon 10
-----gtat-ccttcttatacaatctactttcataatctacagtgcttgcatatg----acattccccatatataattcaatt-tcttttatgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTATTCAGCCATTAACATGATGCAGAAAGTTTATATTTTTG
      ||| || | || |    | |  ||  | | | |  | |  ||    |||    |  ||     |||| | ||  ||  | |||| |   |  || ||||| ||||| |||||  |||||||||||||||||||||||||| |  |||||||||                                         
ttctcctataccatgttgttttgtttggttctacattgttgaatcattaaggatgctcaaatttgtttgtatagacttttatggtgttttgttcttgcagATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCATGGTTGCGGCTTAAAG-----------------------------------------

upper sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 7
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 10
------gtatccttcttatacaatctactttcataatctacagtgcttgcatatgacattccccatatataattcaatttcttttatgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTATTCAGCCATTAACATGATGCAGAAAGTTTATATTTTTG
      | |     ||| | |||   |||   | || | |   |   |   ||| | ||     || || ||||     | ||  |  | || || |||||||| || |||||||| ||||||||||||||||||||||||||| | || || |                                         
gtaaaagaaaaacacttct-caacacactccta-aaccaaatttttgtctttataagat-----atctaaaatttt-cgtattacacttgtacagTTTGTTAACCGGGTCAATCCTTGCTCATGAGATGATGCATGCATGGCTTCGACTAAATG-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000679|gb|BI321493.1|BI321493
EST:     ATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAG                         GTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAG
genomic: ATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttct ... atgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgcttgcatatgacattccccatatataattcaatttcttttatgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTATTCAGCCATTAACATGATGCAGAAAGTTTATATTTTTG
                                     tttcttttat  CT-rich tract
                        atatataattcaattt  TA-rich tract