1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccataggttttgatgacctgttgaataactttcttctatcaatgccgcatcccctggtttcagtggtttgctgcatgttttccttagcttgtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT
species | Glycine max |
transcript | GLYMA01G37790.1 |
intron # | 7 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGEST: gi|151412819|gb|EV282631.1|EV282631
genomic: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
EST: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGEST: gi|8402595|gb|BE058229.1|BE058229
genomic: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
EST: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGEST: gi|192330469|gb|FK021214.1|FK021214
genomic: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
EST: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGEST: gi|192330470|gb|FK021215.1|FK021215
genomic: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
EST: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGEST: gi|151412430|gb|EV282242.1|EV282242
genomic: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
EST: TGAGCTTCCTCCACATCGGCTCGCTGAAATCAGAAGATTCTTTGAGGACT ACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
genomic: TGAGCTTCCTCCACATCGGCTTGCTGAAATCAGAAGATTCTTTGAGGACTgtatcctgtt ... gtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTG
cgcatcccctggtttcagtggtttgctgcatgttttccttagcttgtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT
ttccttagc putative branch site
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataggttttgatgacctgttgaataactttcttctatcaatgccgcatcccctggtttcagtggtttgctgcatgttttccttagcttgtcacactagACAAGAAGAATGAGAACAAAATAGTTGATGTTGAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - tgatgac
- - - - - - - - -ctgttga
- - - - - - - - - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - - - - - - - - -catcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc