Sequence
atgc intronic sequence ATGC exonic sequence...gccattgtcaatgtacaatctcacgtcatttaatggcaaagctttgtagtttgataaagcttcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACAGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT
Basic information
species | Glycine max |
transcript | GLYMA01G37760.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G37760.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
gccattgtcaatgtacaatctcacgtcatttaatggcaaagctttgtagtttgataaagcttcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACAGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT
| | || |||| | | | || | ||| | || | | | | ||| || | | ||||| || || ||||| | |||||||||||||||| |||||||||||| | || | |
gtattggttcatgttc--tgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaat-gttctaattaatat---ccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------
upper sequence: GLYMA01G37760.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
gccattgtcaatgtacaatctcacgtcatttaatggcaaagctttgtagtttgataaagct------tcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAAC----AGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT
|| | ||| | || |||| | | |||| | || ||| || | | | || || | ||| || || | | | |||||||||||||||||||||||||||||| ||||||| || | ||| ||| || | | | | | || ||| | |
----gtgcagagtagcaaacctttgttcaataattgtagc-ctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttat-cctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA---- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagtttgataaagcttcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACAGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT
ttcatatactacatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gccattgtcaatgtacaatctcacgtcatttaatggcaaagctttgtagtttgataaagcttcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACAGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC