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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catggggttaaattaatttacatcttagaatttctaagtcacagtaaagcttcattggtggttataatcttttgttggtttggtcatttatcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGACATGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGC

Basic information

species Glycine max
transcript GLYMA01G36990.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396744|gb|EV266617.1|EV266617
EST:     AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG                         CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: gi|10847418|gb|BF070105.1|BF070105
EST:     AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG                         CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: gi|16997110|gb|BM086482.1|BM086482
EST:     GATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG                         CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
genomic: GATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: gi|192294443|gb|FG987372.1|FG987372
EST:     AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG                         CACTCCAATTGTCAATAGCAGATAGTACAAAGAATCAAGGCAGCCAGTCAG
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: gi|13789154|gb|BG651745.1|BG651745
EST:     AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG                         CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcttcattggtggttataatcttttgttggtttggtcatttatcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGACATGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGC
                ttataatcttttgtt  TA-rich tract