1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catggggttaaattaatttacatcttagaatttctaagtcacagtaaagcttcattggtggttataatcttttgttggtttggtcatttatcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGACATGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGC
species | Glycine max |
transcript | GLYMA01G36990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGEST: gi|10847418|gb|BF070105.1|BF070105
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGEST: gi|16997110|gb|BM086482.1|BM086482
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: GATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGEST: gi|192294443|gb|FG987372.1|FG987372
genomic: GATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG CACTCCAATTGTCAATAGCAGATAGTACAAAGAATCAAGGCAGCCAGTCAGEST: gi|13789154|gb|BG651745.1|BG651745
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
EST: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGG CACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
genomic: AGATACAGATATGTCAGAAGCTTCTGCAAGTGATCCTGACTTGGCTCTGGgtgagtttta ... tcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAG
aaagcttcattggtggttataatcttttgttggtttggtcatttatcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGACATGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGC
ttataatcttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggggttaaattaatttacatcttagaatttctaagtcacagtaaagcttcattggtggttataatcttttgttggtttggtcatttatcgcttgcagCACTCCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGACATGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGC
- tggggtt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttgg