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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaattgctttattgtttctatttctaatcatcaaagatatggttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT

Basic information

species Glycine max
transcript GLYMA01G36870.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 7
gtctaattgctttattgtttctatttctaatca-tcaaagatatggttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT
    || |  | |||  | |  |     |  || |   | |  |   | | |  ||||||| |||  |||| |||  | |  | | || |||      | ||||||| |||| ||||||| | || || | |||| | || || |||||||||||||| || || || |||||||||||||| ||||| |||||  |  
-gtaaaatattatatcctgtaaacacacatacacttgcaaacttaacttattccctaaccaaaaactaatgtttt--tctgatgatttctca------gATTGTGAACTGCAGAGATGAGATTGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTC

upper sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 7
-----------------------------------------------gtctaattgctttattgtttctatttctaatcatcaaag------atatgg--ttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT
                                               |||   ||  |||  |  || ||||| | ||  | || |      || |||  ||  | |   ||| | || | ||||     |      || |  || | || ||||||| ||||| ||||||||| | || || ||||| ||||||||||| |||||||||||||| || |||||||| |||||||||||||||||    || |
gtctgatctatttagttgtctctcaacagtttttttttttttttttggtcattttcgttttcttcttttatttgtcattttgaaggcgtgatatgtggcttttgcatgacaactataacataatggagcctacatggcattcgtctttgatagGTTGTCAATTGTAAAGATGAGATTGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTAT

upper sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ27365 (Selaginella moellendorffii), 3'ss of exon 7
gtctaattgctttattgtttctatttctaatcatcaaagatatggttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT
                                        |||| ||   | |    |  || ||| || |  |      || ||  | ||    |||||||| ||||||||||| ||  | || ||||  || |||||||| ||||| || ||||| ||||||||||||| |||| |||||||| | ||     |  
---------------------------------------gtatgtttctatgtt---cttgagaaatataaact------ctaaaagagcac---cagGTTGTTAATTGCAAAGACGAAATCGCACAGTACTATTTGATGGACTGTATCATCCAAGTGTTCCCCGATGAGTTTCACCTGCAAACTTTAGAATCTCTTC

upper sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ33136 (Selaginella moellendorffii), 3'ss of exon 7
gtctaattgctttattgtttctatttctaatcatcaaagatatggttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT
                                        |||| ||   | |    |  || ||| || |  |      || ||  | ||    |||||||| ||||||||||| ||  | || ||||  || |||||||| ||||| || ||||| ||||||||||||| |||| |||||||| | ||     |  
---------------------------------------gtatgtttccatgtt---cttgagaaatataaact------ctaaaagagcac---cagGTTGTTAATTGCAAAGACGAAATCGCACAGTACTATTTGATGGACTGTATCATCCAAGTGTTCCCCGATGAGTTTCACCTGCAAACTTTAGAATCTCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417219|gb|FK382519.1|FK382519
EST:     TACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAG                         GTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATA
genomic: TACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAGgtctaattgc ... tcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATA
EST: gi|208313438|gb|GE116442.1|GE116442
EST:     TTGACCTAGATATGTACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAG                         GTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATA
genomic: TTGACCTAGATATGTACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAGgtctaattgc ... tcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATA
EST: gi|208143832|gb|GD942933.1|GD942933
EST:     TTGACCTAGATATGTACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAG                         GTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATC
genomic: TTGACCTAGATATGTACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAGgtctaattgc ... tcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttaactttctaaccagaaaaaaatgatttgttttcctcaattatcatggacagGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGT
        ttctaac  putative branch site (score: 1)
                  aaaaaaatgatttgtt  TA-rich tract