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...atgtatttgctaggatttgagcacacatcggaatttagtattaagcatacattttgcgggtctctttaaatgttttacccatagctactttctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTAGTG
species | Glycine max |
transcript | GLYMA01G36860.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATEST: gi|193611170|gb|FK563038.1|FK563038
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTAT
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTEST: gi|193706751|gb|FK644900.1|FK644900
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTT
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTTATTTGTATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTEST: gi|193467641|gb|FK433538.1|FK433538
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTT-ATT-G-ATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGT
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCEST: gi|193404515|gb|FK368196.1|FK368196
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GGAAGATGTTGAACTATCACA -GGGGATTTATTGATGATTTCCTCTCTCATTTGATATGTTGCTGCTGTGCEST: gi|193418897|gb|FK382239.1|FK382239
genomic: GGAAGATGTTGAAC-ATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGC
EST: GGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATATGTTGCTGCTGTGCCEST: gi|193427696|gb|FK394380.1|FK394380
genomic: GGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATATGTTGCTGCTGTGCCEST: gi|193545650|gb|FK501245.1|FK501245
genomic: GGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCEST: gi|58017076|gb|CX703818.1|CX703818
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCEST: gi|58015866|gb|CX702608.1|CX702608
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCEST: gi|58016776|gb|CX703518.1|CX703518
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCEST: gi|193377090|gb|FK342727.1|FK342727
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GGAAGATGTTGGACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTTGTTGCTGCTGTGCEST: gi|193511931|gb|FK471383.1|FK471383
genomic: GGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATG-TGTTGCTGCTGTGC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCEST: gi|57574765|gb|CX547740.1|CX547740
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCEST: gi|207697583|gb|GD679528.1|GD679528
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGGGGATTTATTGAEST: gi|6134694|gb|AW133087.1|AW133087
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGA
EST: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACA GGCGGATGTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCN
genomic: GCTATACTTGCTGCGTAAGGAGGAAGCTTCGGAAGATGTTGAACATCACAgtaatgcttc ... tctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCC
catacattttgcgggtctctttaaatgttttacccatagctactttctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTAGTG
ctactttct CT-rich tract
tctttaaatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatttgctaggatttgagcacacatcggaatttagtattaagcatacattttgcgggtctctttaaatgttttacccatagctactttctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - ggatttg
- - - - - - - - - - -cacacat
- - - - - - - - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctactt