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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatacaatgaactgaacttacgttagtgaaataccgccatgcagatatagtaatgtaaaatgctcatactatagccaccgtgataactttttaagtataagcccatttattgattaaaatggccgcaatagtttcttatgttattttaaaaatattcacctatcaaatgaacatttatttttggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATTGGCGGCGATGCTTCACTTCATGTGATTCAGGACTCAGTTACCATGGTTG

Basic information

species Glycine max
transcript GLYMA01G36030.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390187|gb|CA853394.1|CA853394
EST:     TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCG                         ATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
genomic: TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCGgtatgataca ... ggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
EST: gi|13478700|gb|BG508070.1|BG508070
EST:     TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCG                         ATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
genomic: TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCGgtatgataca ... ggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
EST: gi|21994213|gb|BQ785741.1|BQ785741
EST:     TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCG                         ATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
genomic: TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCGgtatgataca ... ggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
EST: gi|151396933|gb|EV266806.1|EV266806
EST:     TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCG                         ATTGTTGGCTTTATTGTTGGAGTAGTTCCCC
genomic: TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCGgtatgataca ... ggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCC
EST: gi|33390321|gb|CA853516.1|CA853516
EST:     TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCG                         ATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT
genomic: TAGTCAACTCCAATTTCAGAGCCATATTTTCACCAGCAACTCTTGGAGCGgtatgataca ... ggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttattttaaaaatattcacctatcaaatgaacatttatttttggctatgcagATTGTTGGCTTTATTGTTGGAGTAGTTCCCCAGATACGTAAATTGATGATTGGCGGCGATGCTTCACTTCATGTGATTCAGGACTCAGTTACCATGGTTG
                       tatcaaatgaacattt  TA-rich tract