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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatacttgattgcttggcataaacaatatcaatatgcaatggttctcccacttactgatcttgtatgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTTTTGGGCATTTTAGG

Basic information

species Glycine max
transcript GLYMA01G30400.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924521|gb|AW830547.1|AW830547
EST:     TGGAAGAAGATGTCAAGCTTCTTGAGGAGATGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTT
genomic: TGGAAGAAGATGTCAAGCTTCTTGAGGAGATGTATCCACAAGGGGAAAAGgtagatactt ... atgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTT
EST: gi|23057508|gb|BU578182.1|BU578182
EST:     TGGAAGAAGATGTCAAGCTTCTTGAGGAGATGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTT
genomic: TGGAAGAAGATGTCAAGCTTCTTGAGGAGATGTATCCACAAGGGGAAAAGgtagatactt ... atgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTT
EST: gi|17022512|gb|BM093546.1|BM093546
EST:     CTTGAGGAGATGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTT
genomic: CTTGAGGAGATGTATCCACAAGGGGAAAAGgtagatactt ... atgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacaatatcaatatgcaatggttctcccacttactgatcttgtatgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTTGTTTTGGGCATTTTAGG
                                 tactgat  putative branch site (score: 2)
     aatatcaatat  TA-rich tract