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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgattgcttcttttgttgcatgcactcccaaaaactcattgaacttctaacctttgaatttgtgtttacttgctctcacttgtgtctttctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGAGAATTTTCTATGGGGACTGGTTGCAATTGCAAATGCAGTGGAAAATTGT

Basic information

species Glycine max
transcript GLYMA01G27120.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193698260|gb|FK641487.1|FK641487
EST:     CGGCCGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|254340376|gb|GR858501.1|GR858501
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|208124378|gb|GD923250.1|GD923250
EST:     ATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: ATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|208248950|gb|GE046379.1|GE046379
EST:     CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|254340375|gb|GR858500.1|GR858500
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctaacctttgaatttgtgtttacttgctctcacttgtgtctttctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGAGAATTTTCTATGGGGACTGGTTGCAATTGCAAATGCAGTGGAAAATTGT
                             ctctcacttgtgtctt  CT-rich tract
         tttgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgattgcttcttttgttgcatgcactcccaaaaactcattgaacttctaacctttgaatttgtgtttacttgctctcacttgtgtctttctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGAGAATTTTCTATGGGGACTGGTTGCAATTGCAAATGCAGTGGAAAATTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - tgcttct
- - - - - - - -tgttgca
- - - - - - - - - - - - cactccc
- - - - - - - - - - - - - - - - - - - - - - - - - -acctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgtg