1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtatgccatgcctgtacttattaaagctgcaattaattgtaattatataattcaatgagaaataatctgacatcttcaatttgatttgtttgtgttcagTCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCCTATGTTTTGGGAGAATGGCAAATTATCTACTCAGGGTAAAATTGCAATA
species | Glycine max |
transcript | GLYMA01G22470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGAGTACCAGAGCAACTTTATTCGATTGGTGTGCATGGTGGAGCTATTGA TCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCCEST: gi|21889499|gb|BQ742712.1|BQ742712
genomic: CGAGTACCAGAGCAACTTTATTCGATTGGTGTGCATGGTGGAGCTATTGAgtatgacctt ... ttgtgttcagTCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCC
EST: CGAGTACCAGAGCAACTTTATTCGATTGGTGTGCATGGTGGAGCTATTGA TCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCC
genomic: CGAGTACCAGAGCAACTTTATTCGATTGGTGTGCATGGTGGAGCTATTGAgtatgacctt ... ttgtgttcagTCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCC
atataattcaatgagaaataatctgacatcttcaatttgatttgtttgtgttcagTCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCCTATGTTTTGGGAGAATGGCAAATTATCTACTCAGGGTAAAATTGCAATA
tttgttt CT-rich tract
aatttgatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatgccatgcctgtacttattaaagctgcaattaattgtaattatataattcaatgagaaataatctgacatcttcaatttgatttgtttgtgttcagTCTCTCTGGAAACAAAGGTCTGTGTGGTGTACCATCTCTGCCAGATTGTCCTATGTTTTGGGAGAATGGCAAATTATCTACTCAGGGTAAAATTGCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
tgtatgc
- - - -catgcct
- - - - - - - - - - - - aagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg