Sequence
atgc intronic sequence ATGC exonic sequence...tttttatgacatacagttgtcaatctactgtttatttagtttggggttttattgtaggtttgttttcttggtatcttaagatttccttccttctttgaagGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACA
Basic information
species | Glycine max |
transcript | GLYMA01G20810.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 3'ss of exon 5
--------tttttatgacatacagttgtcaatctactgtttatttagtttggggttttattgtaggtttgttttcttggtatcttaagatttccttccttc-------tttgaagGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACA
|| | ||| || ||| ||| | | ||| ||| | | ||||| ||| | | | | | | ||| || || | || || ||||| | || | | |||| ||| |||| || |||| ||||||||||||||||| ||||||||||
actcctgaaacttctttcattgccttttcattctgacatgtgtttg---tggagaataattgtctgttggctaaggagtttttcgtaaattattttattttagGGCTATCTGCGAGGGAAAGGGAATGGCATTCCTATTGTAAGGAGTGGACTCGACGATAATTGGGATGATGCAGAAGGTTATTACA
upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G25840.2 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------------------------------------------------tttttatgacat-acagttgtcaatctactgtttatttagt--ttggggt---tttattgtaggtttgt----tttcttggtatcttaagatttccttccttctttgaagG--GTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACA
||| || | | | | || | || ||| |||||| ||| || ||| || ||||| | ||| | | ||||| | | ||||||| | || | ||||| || ||| | | || | |||| | || ||||| || |||||||||||||||||||||||||| |
gtatgtatttaacttaactacttcatatcgtctaaccgtgtatttgtactgtttactaaccttctgatgttgtcatcttaagtttactgttttgatcatcatgaaacc-ctttttctttagtgtttgaggaaaattttgtgagggtttttaatattttcttttctcttatattaaacccacttcttttagGGAGGGAAAGGTGATGGTGTTCCCATGGTGAGGAGCGGGCTTCATGATAATTGGGATGATGCAGAGGGTTATTATA
upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 5
-tttttatgacatacagttgtcaatctactgtttatttagtttggggttttattgtaggtttgttttcttggtatcttaagatttccttccttctttgaagGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACA
| ||| || | | | | || | | | | ||| || | || ||| | | | | | | | || |||||| |||| | |||||| || |||| ||||| ||| |||| ||||| ||||||||||||||||||||||| || || |
tgtcctatttattaatgccttgagtgacctttgtttgtgattttggaactaatatcttatttcaatcatgcttgacctgat-tggtattttttcttttcagGGAAGAGGAGATGGCTTACTAATTGAAAGGAGTGGTCTTCATGACAATTGGGATGATGCAGAGGGATACTATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttattgtaggtttgttttcttggtatcttaagatttccttccttctttgaagGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACA
tttccttccttcttt CT-rich tract
ttaagattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttatgacatacagttgtcaatctactgtttatttagtttggggttttattgtaggtttgttttcttggtatcttaagatttccttccttctttgaagGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG