1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattctttaccttttactggatttgggaatttcattattcatgtcatttgtcatctgaacaacaaaatgataattgaattagtgacattagtttctgtattcatgttggatgggttgctgtacgcctccctcccctctgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAA
species | Glycine max |
transcript | GLYMA01G12340.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|208288972|gb|GE088009.1|GE088009
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGEST: gi|254330187|gb|GR839740.1|GR839740
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|31309088|gb|CD394291.1|CD394291
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACCTTGCAGGAGAGACTGGAAAGEST: gi|13252312|gb|BG363215.1|BG363215
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|254314431|gb|GR832016.1|GR832016
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|9564183|gb|BE473692.1|BE473692
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|11275201|gb|BF325524.1|BF325524
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|10255901|gb|BE823667.1|BE823667
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|254338283|gb|GR849808.1|GR849808
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|7590561|gb|AW706311.1|AW706311
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTNCCTTAAGAACATTGCAGGAGAGACTGGAGAGEST: gi|31466806|gb|CD408834.1|CD408834
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|31474882|gb|CD416910.1|CD416910
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGEST: gi|22524240|gb|BU083051.1|BU083051
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
ttctgtattcatgttggatgggttgctgtacgcctccctcccctctgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAA
ctgtacgcctccctcc CT-rich tract
tattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattctttaccttttactggatttgggaatttcattattcatgtcatttgtcatctgaacaacaaaatgataattgaattagtgacattagtttctgtattcatgttggatgggttgctgtacgcctccctcccctctgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA