1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtttgtccatcgttttcagaattacaatgctatatggttttaggctggaatctaagtttgtgttcatatatctcacatttttgtattatggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGACCACCCACACTAC
species | Glycine max |
transcript | GLYMA01G05800.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA GAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTEST: gi|31471470|gb|CD413498.1|CD413498
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtctta ... ggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
EST: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA GAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTEST: gi|151400968|gb|EV270782.1|EV270782
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtctta ... ggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
EST: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA GAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTEST: gi|15001277|gb|BI322091.1|BI322091
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtctta ... ggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
EST: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA GAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTEST: gi|9987060|gb|BE661168.1|BE661168
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtctta ... ggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
EST: GGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA GAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTEST: gi|254340833|gb|GR854561.1|GR854561
genomic: GGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtctta ... ggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
EST: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA GAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtctta ... ggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGT
ctggaatctaagtttgtgttcatatatctcacatttttgtattatggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGACCACCCACACTAC
atctcac putative branch site (score: 3)
acatttttgtattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgtccatcgttttcagaattacaatgctatatggttttaggctggaatctaagtttgtgttcatatatctcacatttttgtattatggtgaaacagGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGACCACCCACACTAC
- - - - - - - - - - - - -caatgct
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc