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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcacttcagtgatacagctttcttaatggtctcgtttaataactgtcagactgtttcttttacttctatactggtctctcatattcttcttcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCCAGATTATTTCAACATCAAAATATAGTGCCGGATGGTTTGTGGTTAGCAT

Basic information

species Glycine max
transcript GLYMA01G03610.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03610.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G028834_T03 (Zea mays), 3'ss of exon 6
gcacttcagtgatacagctttct-taatggtctcgtttaat--aactgtcagactgtttcttttacttctatactggtctctcatattcttcttcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCCAGATTATTTCAACATCAAAATATAGTGCCGGATGGTTTGTGGTTAGCAT--
   |||    || ||   ||||| | | | |||    || |  | ||   | |  |||| ||||  |   ||  ||  |     | ||||      |   ||||||||||||||| |||||||||||||||||| || |||| || |||||  | || || |||| |||||| || |||      |        |  || |    
---ctttgtagaaacctttttctcttaggttctgaagtagtttatctagtataaagtttgtttttttctaattatgtccatgttttttctctgatcttattagTTTTTCAAGTGGCGGTGAAGATGGTTATGTAAGGCTGCATCATTTTGATTCCGACTACTTCAGCATCAAGATGTAGA--TAAAGAACACCAGACTAACCCGA

upper sequence: GLYMA01G03610.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G143330_T01 (Zea mays), 3'ss of exon 6
-gcacttcagtgatacagctttcttaatggtctcgtttaat-----aactgtcagactgtttcttttacttctatactggtctctcatattcttcttcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCCAGATTATTTCAACATCAAAATATAGTGCCGGATGGTTTGTGGTTAGCAT
    |||    |||||   ||   |   | ||| |  | ||     || | |   | | ||| |  ||  || ||  |  |   |     |  |||| || | ||| ||||||||||| ||||||||||| |||||| ||||||| || |||||  | || || || | ||||||||| |||     ||      |   | ||   
catgctttgtagataccttttctcttgcgttctggagttatttttaaattttagaagtttttttactaactccatgttcattctt-----ttatcttattat-tagCTTTTCAAGTGGTGGTGAAGATGGATATGTAAGGTTGCATCATTTTGATTCTGACTACTTTAGCATCAAAATGTAGATAAAGAACAGACG-AATCAGAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208323562|gb|GE119179.1|GE119179
EST:     TTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCC
genomic: TTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|193383818|gb|FK353015.1|FK353015
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTT-CAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGAACC
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGA-CC
EST: gi|213604401|gb|DB983489.1|DB983489
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|209726208|gb|BW659573.1|BW659573
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|193449022|gb|FK413817.1|FK413817
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTT
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTT
EST: gi|193552832|gb|FK510723.1|FK510723
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTT
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTT
EST: gi|208073965|gb|GD871550.1|GD871550
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|15662606|gb|BI699977.1|BI699977
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|193312788|gb|FK280856.1|FK280856
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|208111164|gb|GD910030.1|GD910030
EST:     TTTTGGACCAATTAATGCATTGGC--TTAACCCTGATGGAAAAAG                         TTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
genomic: TTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCC
EST: gi|207774007|gb|GD745523.1|GD745523
EST:     GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAG                         TTTTTCAAGTGG
genomic: GGGCATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGAAAAAGgtatattctg ... tcttgtgtagTTTTTCAAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagactgtttcttttacttctatactggtctctcatattcttcttcttgtgtagTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCCAGATTATTTCAACATCAAAATATAGTGCCGGATGGTTTGTGGTTAGCAT
                             tctctcatattcttct  CT-rich tract
        tttctttta  TA-rich tract