1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctggctaacatgttgctattcataattatgtctatctttgagtagtttgcaacaaaaagtgacattgaaggtttggtgctatgcttcattttttgtatagGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGATCCGGAATCTTAGTCGGGTATTGGCCATCATTCTTGTTCACACACCTAAGGGATCATGCAAGCA
species | Glycine max |
transcript | GLYMA01G03390.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCTCATCTGGAAT GATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGATCCGGAATCTTAGTC
genomic: GCTTGCTCATCTGGAAGgtaatttcgt ... ttttgtatagGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGATCCGGAATCTTAGTC
tttgcaacaaaaagtgacattgaaggtttggtgctatgcttcattttttgtatagGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGATCCGGAATCTTAGTCGGGTATTGGCCATCATTCTTGTTCACACACCTAAGGGATCATGCAAGCA
cttcatttttt CT-rich tract
ttcattttttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggctaacatgttgctattcataattatgtctatctttgagtagtttgcaacaaaaagtgacattgaaggtttggtgctatgcttcattttttgtatagGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGATCCGGAATCTTAGTCGGGTATTGGCCATCATTCTTGTTCACACACCTAAGGGATCATGCAAGCA
ctggcta
- - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg