1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattacactttctacacctaatttcttcaagaggtcatctatgtatacaaggttgtaatgttcacatcttcatttatccttttatttgtgaaacattgttgctctattaatacatgcatttatctgtcagttaataattttggtgtataaaacgttttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAACTGGCCCTTGCAAAGTATAGACAGGTGATTTGGCAAGGGAGGGTTCTTA
species | Glycine max |
transcript | GLYMA01G02850.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAG GATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAAEST: gi|6481903|gb|AW201174.1|AW201174
genomic: CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAGgtattacact ... tttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA
EST: TAGGAAAAATGCAGGGAAAATTGGTGGTTCTACACCTCCGATTTGATAAG GATATGGCAGCCCATTCGGCCTGCEST: gi|21677209|gb|BQ629560.1|BQ629560
genomic: TAGGAAAAATGCAGGGAAATTTGTTG-TTCTACACCTCCGATTTGATAAGgtattacact ... tttatggcagGATATGGCAGCCCATTCGGCCTGC
EST: CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAG GATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA
genomic: CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAGgtattacact ... tttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA
tacatgcatttatctgtcagttaataattttggtgtataaaacgttttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAACTGGCCCTTGCAAAGTATAGACAGGTGATTTGGCAAGGGAGGGTTCTTA
agttaat putative branch site (score: 4)
ttaataattttggtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattacactttctacacctaatttcttcaagaggtcatctatgtatacaaggttgtaatgttcacatcttcatttatccttttatttgtgaaacattgttgctctattaatacatgcatttatctgtcagttaataattttggtgtataaaacgttttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAACTGGCCCTTGCAAAGTATAGACAGGTGATTTGGCAAGGGAGGGTTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG