1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatggttattattttgctaggatgctttgccatttcagcttcaggaaattttatggtattgtcatgtatagctagataatgtactcttgtttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTATATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCTTTCATGGAGTTTT
species | Glycine max |
transcript | GLYMA01G01470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGG GCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTAEST: gi|193378479|gb|FK343784.1|FK343784
genomic: AAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGGgtaattgttt ... tttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTA
EST: CTTCTTAAGCCGG GCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTAEST: gi|151408564|gb|EV278372.1|EV278372
genomic: CTTCTTAAGCCGGgtaattgttt ... tttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTA
EST: AAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGG GCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTAEST: gi|151412872|gb|EV282684.1|EV282684
genomic: AAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGGgtaattgttt ... tttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTA
EST: AAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGG GCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTA
genomic: AAGATGAGCTTCACTTTCTTCCAGATGTTGCCGAGTACTTCTTAAGCCGGgtaattgttt ... tttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTA
gaaattttatggtattgtcatgtatagctagataatgtactcttgtttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTATATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCTTTCATGGAGTTTT
tactcttgtttccttc CT-rich tract
tagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatggttattattttgctaggatgctttgccatttcagcttcaggaaattttatggtattgtcatgtatagctagataatgtactcttgtttccttcagGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATAGTATATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCTTTCATGGAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - ttgctag
- - - - - - - - - - - - -ctttgcc
- - - - - - - - - - - - - - - - - - cagcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat