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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaattttatcaaatctacatttctcatatatgcatttatatgtatttatgcttttagtgaatattaattccttttacattcatagGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAG

Basic information

species Glycine max
transcript GLYMA01G01390.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285515|gb|AW598002.1|AW598002
EST:     TAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAG                         GTCTTGGATGACCGTTCTCGTGATGAGCGCCTAGTTGCTGTTACTGGAAA-
genomic: TAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattt ... acattcatagGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCT-TTACTGGAAAA
EST: gi|6915515|gb|AW397045.1|AW397045
EST:     TAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAG                         GTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAG
genomic: TAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattt ... acattcatagGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAG
EST: gi|207788016|gb|GD759700.1|GD759700
EST:     AAGACTTAAGCTGCCAATCATGATGTCATGCAGATAGTTGAG                         GTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAG
genomic: AAGACTT-AGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattt ... acattcatagGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatttatatgtatttatgcttttagtgaatattaattccttttacattcatagGTCTTGGATGACCGTTCTCGTGATAAGCGCCTAGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAG
                               tattaat  putative branch site (score: 2)
                                     ttccttttacattc  CT-rich tract
     ttatatgtatttatgc  TA-rich tract