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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcgtggcactattctcattcttattttttgaccatttattttatttgtattggagctttctgagtttttttgtgtcgttttttttatgggatgtaacagGACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAG

Basic information

species Glycine max
transcript GLYMA01G01070.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018532|gb|CX705274.1|CX705274
EST:     GAGATACTGTTCTTCCAAAATTGAG-ATTCTTTTCATACTTAG                         GACATATCACATAG-TGNTAATGCATCATGATACATCTTCGGATCTGAAGG
genomic: GAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAGgtatgataat ... gatgtaacagGACATATCACATAGTTG-TAATGCATCATGATACATCTTCGGATCTGAAGG
EST: gi|192321290|gb|FK012051.1|FK012051
EST:     TTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAG                         GACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGT
genomic: TTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAGgtatgataat ... gatgtaacagGACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGT
EST: gi|192321770|gb|FK013190.1|FK013190
EST:     TTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAG                         GACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGT
genomic: TTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAGgtatgataat ... gatgtaacagGACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGT
EST: gi|18725174|gb|BM523601.1|BM523601
EST:     TTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAG                         GACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGT
genomic: TTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCATACTTAGgtatgataat ... gatgtaacagGACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtattggagctttctgagtttttttgtgtcgttttttttatgggatgtaacagGACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAG
                                 ttttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcgtggcactattctcattcttattttttgaccatttattttatttgtattggagctttctgagtttttttgtgtcgttttttttatgggatgtaacagGACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
tgcgtgg
- - - - - - - ctcattc
- - - - - - - - - - - - - - - - ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctg