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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctataatttatctgacttgtggctttaggaatgtaaatgaactttataccaacatcattttgatatttatgatctgtgaaattaatttcattagagtagcaattaattaatgattcaacctgattatccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCATAGATAATGATATTCCA

Basic information

species Glycine max
transcript GLYMA01G00870.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691740|gb|AW759862.1|AW759862
EST:     ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG                         GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
EST: gi|192321852|gb|FK013230.1|FK013230
EST:     ATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG                         GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: ATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
EST: gi|10237267|gb|BE806155.1|BE806155
EST:     ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG                         GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
EST: gi|6566092|gb|AW233852.1|AW233852
EST:     CTCAGAAGGGTGCATCTGCAATTTTTGAG                         GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: CTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaatttcattagagtagcaattaattaatgattcaacctgattatccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCATAGATAATGATATTCCA
                    aattaattaatgattc  TA-rich tract