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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcctgctattgcatttggtatgagaattgtaactatgatctaagtttattccctttctaattcatttctgcaaaactgtgcttttattttagGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAG

Basic information

species Glycine max
transcript GLYMA20G37930.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332836|gb|FK026837.1|FK026837
EST:     CGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAATTCTGAAAA                         GTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAG
genomic: CGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAgtgagtgcct ... tttattttagGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaagtttattccctttctaattcatttctgcaaaactgtgcttttattttagGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAG
                 ttctaat  putative branch site (score: 2)
                                           cttttatttt  putative PPT
                tttctaattcattt  TA-rich tract