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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttcccgaagccagattgattatatatttcaataaacccttttgaaaagtttctgatacgaatgtcttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATG

Basic information

species Glycine max
transcript GLYMA20G25650.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25650.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g04180.t01 (Vitis vinifera), 3'ss of exon 5
---------------------gtttgtttcccgaagccagattgattatatatttca-------ataaacccttttgaaaagtttctgatacgaatgtcttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATG
                     | || |     ||| |     | | | ||  |||         ||| || ||| | |  |   |    |     |    | |  ||||    | | ||||||||||||||||||| |||||||||||||| || |||||| ||||||
gtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcagGAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258577|gb|BG881485.1|BG881485
EST:     GATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAG                         GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
genomic: GATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
EST: gi|151410752|gb|EV280567.1|EV280567
EST:     TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATGG                         GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
genomic: TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
EST: gi|7926175|gb|AW832201.1|AW832201
EST:     TGGCAAGATGTGTTTGCTGGAGCTCTTATAG                         GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
genomic: TGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
EST: gi|151413050|gb|EV282858.1|EV282858
EST:     TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAG                         GGATGATAATTGCTTCATTTTGTTACTT
genomic: TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatttcaataaacccttttgaaaagtttctgatacgaatgtcttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATG
                              ttctgat  putative branch site (score: 3)
                                            tcttttacc  putative PPT
     atttcaataaa  TA-rich tract