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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttgctcacttctgttttccgagaatctaacgtttatacctgctttgattatctgtgctttttgcatgcaatctttgtcatatcaactggaaacatgagggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGATCCATTAGTGAGCCAATTTCTTTATGAGAAAGCTTCTAGTAAAGATAAGA

Basic information

species Glycine max
transcript GLYMA20G25020.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25020.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g03620.t01 (Vitis vinifera), 3'ss of exon 7
gttagtttttgctcacttctgttttccgagaatctaacg--tttatacctgctttgattatctgtgctttttgcatgcaatctttgtcatatcaactggaaacatgagggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGATCCATTAGTGAGCCAATTTCTTTATGAGAAAGCTTCTAGTAAAGATAAGA
|| ||||| | |  |     |  ||     |  || |     | |    ||| |  |||   | | |||||    |   || || | || |  |     |    |   |||  ||||||||||  | |||||  ||||||| |||||||| |||||| ||||||| |||||| |||||||||| || ||||||||||| ||||||||||||||||| |
gtcagtttctccagaagaaagaattattgcatgcttattacctcagttatgcatacattcatttttcttttcttttctcat-ttggacaaagaattactatttttagaggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGATCCACTAGTGAGCCAGTTCCTTTATGAGAAGGCTTCTAGTAAAGATAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929619|gb|BU546758.1|BU546758
EST:     GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAG                         GTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
genomic: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagttttt ... ggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
EST: gi|58021857|gb|CX708598.1|CX708598
EST:     GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAG                         GTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
genomic: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagttttt ... ggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
EST: gi|8284024|gb|BE021583.1|BE021583
EST:     GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAG                         GTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
genomic: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagttttt ... ggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctttttgcatgcaatctttgtcatatcaactggaaacatgagggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGATCCATTAGTGAGCCAATTTCTTTATGAGAAAGCTTCTAGTAAAGATAAGA
               aatcttt  TA-rich tract