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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acattcacaaaaccctaaaaaaagcttagttacttctaccagattttgcacgttgcaagtattcaattcaataatatcaactttatgctgttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAG

Basic information

species Glycine max
transcript GLYMA20G24450.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327126|gb|FK015518.1|FK015518
EST:     AACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAG                         CTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG
genomic: AACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG
EST: gi|193485620|gb|FK449105.1|FK449105
EST:     AACTACTAGCGATGGGCGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAG                         CTTGATGATGATATCAAAACTCGTATACA
genomic: AACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACA
EST: gi|207687829|gb|GD668052.1|GD668052
EST:     CTCCAAAGAAGAAG                         CTTGATGATGATATCAAA-CTCGTATACAAGTTAAGGAAGATGG
genomic: CTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGG
EST: gi|298177815|gb|HO027368.1|HO027368
EST:     AACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAAAAG                         CTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGACCCAAG
genomic: AACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG
EST: gi|208027113|gb|GD822095.1|GD822095
EST:     CTCCAAAGAAGAAG                         CTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG
genomic: CTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG
EST: gi|208223190|gb|GE024813.1|GE024813
EST:     CTCCAAAGAAGAAG                         CTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGG
genomic: CTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGG
EST: gi|207698297|gb|GD680564.1|GD680564
EST:     CTCCAAAGAAGAAG                         CTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG
genomic: CTCCAAAGAAGAAGgtgaattgca ... ttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcacgttgcaagtattcaattcaataatatcaactttatgctgttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAG
                                          ctgtttt  CT-rich tract
              tattcaattcaataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acattcacaaaaccctaaaaaaagcttagttacttctaccagattttgcacgttgcaagtattcaattcaataatatcaactttatgctgttttgtgcagCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG