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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctttgcaaatgcattagaatttgattttacctttcttacggtagtacttgacatatgtgtgttatcattttgtgcttttaactggcgtccacaataggccaacttcagttgataagttgcttaattatctgatcatcatatcattaaacttatggattgttactgccctctgtgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGGGAAAAGACCAAGAATGTTGCTGACTCGTTGTTATGATCTTTAGGTTCTG

Basic information

species Glycine max
transcript GLYMA20G24430.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193517386|gb|FK476553.1|FK476553
EST:     AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTG                         GTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
genomic: AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTGgtaagctctt ... tgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
EST: gi|208315134|gb|GE112650.1|GE112650
EST:     AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTG                         GTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
genomic: AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTGgtaagctctt ... tgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
EST: gi|117557937|gb|EG702322.1|EG702322
EST:     AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTG                         GTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
genomic: AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTGgtaagctctt ... tgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
EST: gi|31474165|gb|CD416193.1|CD416193
EST:     AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTG                         GTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
genomic: AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTGgtaagctctt ... tgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
EST: gi|193584350|gb|FK539868.1|FK539868
EST:     AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTG                         GTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
genomic: AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTGgtaagctctt ... tgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGG
EST: gi|192312746|gb|FK003972.1|FK003972
EST:     AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTG                         GTGAGATCTTC
genomic: AAGAATATGGGGAATCTATTGGTTTTCGTTACGTAGCTAGTGGTCCACTGgtaagctctt ... tgttttgcagGTGAGATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgatcatcatatcattaaacttatggattgttactgccctctgtgttttgcagGTGAGATCTTCGTACAGGGCTGGGGAGCTGTTTGTCAAGACAATGGTACGGGAAAAGACCAAGAATGTTGCTGACTCGTTGTTATGATCTTTAGGTTCTG
 atctgat  putative branch site (score: 4)
                                      ccctctgt  putative PPT
          atatcattaaacttat  TA-rich tract