1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgactgtattcataaactagagttaacttctcttagaagctggtacatcaggcagctaattttggttatctatggttgacatgtttgtgctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
species | Glycine max |
transcript | GLYMA20G18440.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG GCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAGEST: gi|192305355|gb|FG994037.1|FG994037
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG GCTGCCATTGTGAATTTTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAGEST: gi|120494048|gb|EH222215.1|EH222215
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG GCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAGEST: gi|151394202|gb|EV264073.1|EV264073
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG -CTGCCATTGTGA-TTCTCAGACTCTTGAAGAG-TTGCTAG-CTTGAAAAGEST: gi|16343914|gb|BI969509.1|BI969509
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG GCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
acatcaggcagctaattttggttatctatggttgacatgtttgtgctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
taatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgactgtattcataaactagagttaacttctcttagaagctggtacatcaggcagctaattttggttatctatggttgacatgtttgtgctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - -tgtattc
- - - - - - - - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - tcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt