Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatactttgacatagtatgttttacagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT

Basic information

species Glycine max
transcript GLYMA20G16860.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 3'ss of exon 7
gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatactttgacatagtatgtttta---cagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
                    | | ||   ||     ||  ||          | ||      || |||       |   || | | | || | | | ||   | | | | |  ||     |||| || ||  | |||||||||||||| |||||  |||||||||| ||||||||||| | |||||| ||||| ||||| |||||  |
--------------------tctggtcctttcctagattatagtgactcaggtatactcatgtgaact---gatttccttttttctggctacctgttctactaaacattcttcttccacccagGAACACCTCTATACATGGCTCCAGAACTTGTGAGGGAACAACCTTACAACCACACAGCAGATTTGTGGTCCCTTGGCGTCATCTT

upper sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G50240.2 (Arabidopsis thaliana), 3'ss of exon 6
gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatact-ttgacatagtatgtttta-cagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
                              ||    ||||| | | |       |||  |  | || |  | | ||   |     |||||     |  | || |   |  || |   | ||||||||||| |||||||||| |||||||||||    ||||| |||||| | | |||||| ||  | |||||||||||||| ||| |
-----------------------------gttaaagatctttaattt----ccttagacgtat-taatgagtgaataaatcaataagtctctccttgttattaatccaaaatatcacatcagGCACTCCGCTGTACATGGCACCAGAGCTTGTGAAAGAACAGCCATACGATCGCACTGTCGACCTGTGGTCTCTTGGTGTTATATT

upper sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0039g02400.t01 (Vitis vinifera), 3'ss of exon 6
gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagt-------ctgcatat-actttgacatagtatgtt------ttacagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
|||||||| |||  ||| | | |   |    || |  | || | | |   |  ||     ||    | | ||  ||| |||  | | |       |||| ||| |||    |||  | || |      || |||| ||||| ||||| ||||| |||||||| |||||||| ||||| |||||||||||||  ||||| ||||||||||| || ||  |
gtttggctcatctcaat-gctatcagtatagtttgcctttttagtttgaaaccgttatcactgagccatagaaaattagttacaaatttctgactctgcctatcactcaatcatgctttgatcaatattttcagGTACTCCTTTGTATATGGCCCCAGAGCTGGTACGGGAGCAACCCTACAACCACACTGCTGATTTGTGGTCTCTTGGAGTTATCTT

upper sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ33693 (Selaginella moellendorffii), 3'ss of exon 6
gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagt-ctgcatatactttgacatagtatgtt-ttacagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
                                                                         | | | || || ||| ||  | || | |  |      | | | ||||||| || ||  ||||||||||||| |||||||| || || || || |||||||| || | ||||||||||||||||||||| ||| |
-------------------------------------------------------------------------gttgtcttttagagttctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT

upper sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 6
gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagt-ctgcatatactttgacatagtatgtt-ttacagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
                                                                           | | || || ||| ||  | || | |  |      | | | ||||||| || ||  ||||||||||||| |||||||| || || || || ||||||||||| | ||||||||||||||||||||| |||  
---------------------------------------------------------------------------tgtcttttagagttctatacattcatgaaaccgtgacgctattACAGGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCACACGGCAGATTTATGGTCTCTTGGTGTGATA--


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgaggatttgttctacagtctgcatatactttgacatagtatgttttacagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
                                ctttgac  putative branch site (score: 4)
                           atatacttt  TA-rich tract