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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttatttcttcttactttaaattgtatattaaagtaaggtaacaagagtgtggttccttgattaatattccctttgcttttatgtctgcccttgtgcaaaattagggtcttgcatgtctatctttgcttgttgcataagtcaactactcctactacttatatattcagGGGGAACTAACATATGGGAAGATTGGAGAATGGCGTTTTAACAAGAGATTTTATCTATCAGGTCCTCCACCCAAAAACCTTTCCTTACCCCCTCCTGGAG

Basic information

species Glycine max
transcript GLYMA20G08020.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G08020.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 6
gttagtttatttcttcttactttaaattgtatattaaagtaaggtaacaagagtgtggttccttgattaatattccctttgcttttatgtctgcccttgtgcaaaattagggtcttgcatgtctatctttgcttgttgcataagtcaactactcctactacttatatattcagGGGGAACTAACATATGGGAAGATTGGAGAATGGCGTTTTAACAAGAGATTTTATCTATCAGGTCCTCCACCCAAAAACCTTTCCTTACCCCCTCCTGGAG
                                                              || | || |  |  |||       |    | |  ||     || |||   |||||       ||| ||  || || | | ||| |  || | | | |   ||    ||||||| || || |||||||| ||||||||||||||||||||| |||||||||  | |||    || |||||||| || || ||  || |||| |||||||| |
--------------------------------------------------------------tttactagtgctgtcttg----ccaaactttctttttgtttaagttaaattcttg-------atcattatttatttcttgagtaatttatttcaagttggtaacccttcagGGAGAGCTGACATATGGAAAGATTGGAGAATGGCGTTTTGACAAGAGATCATTTCTTAGTGGCCCTCCACCAAAGAATCTCACCCTACCTCCTCCTGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtctatctttgcttgttgcataagtcaactactcctactacttatatattcagGGGGAACTAACATATGGGAAGATTGGAGAATGGCGTTTTAACAAGAGATTTTATCTATCAGGTCCTCCACCCAAAAACCTTTCCTTACCCCCTCCTGGAG
                                     tactacttatatatt  TA-rich tract