Sequence
atgc intronic sequence ATGC exonic sequence...aaatacaggaagagtttcactgtcccggagttgataaatttgatttacaccttttattatccatttagtgttgaagttctctatatttacttgttgatagGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTT
Basic information
species | Glycine max |
transcript | GLYMA20G07280.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G07280.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G079236_T01 (Zea mays), 3'ss of exon 8
---aaatacaggaagagtttcactgtcccggagt---tgataaatttgatttacaccttttattatccatttagtgttgaagttctctatatttacttgttgatagGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTT
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tctatattcaatcgcatatgtagcctatgaactttcctgataaggtaaggtgttgcctttgcttgttcttata----tgatacttgat-tgttgtgttgctg-cagTGTCCCAGTGGGTCAAGGCTATGGTTTGACTGAAACCTGTGCTGGAGCAGCTTTCACTGAATGGGATGACACAAGTGTGGGTCGTGTTGGTCCACCACTT
upper sequence: GLYMA20G07280.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0057g01270.t01 (Vitis vinifera), 3'ss of exon 7
---aaatacaggaagagtttcactgtcccggagttgataaatttgatt-tacaccttttattatccatttagtgttgaagttctctatatttacttgttgatagGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTT
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tcagtgtgatggaagctatctagaagtttagaactatactaggtaattgtctacctctaacaatgggtatgtggtttatattctgtatgaatgctctt----agGGCTCCTATTGGTCAAGGATATGGTTTGACAGAAACATGTGCTGGAGCTACTTTTACAGAGCCAGATGACCCAAATGTGGGGCATGTTGGACCGCCCCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326437|gb|FK017709.1|FK017709EST: GGAGCTCCTTTATCTGGAGATTCGCAACACTTCATCAATATCTGCATGGG GGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGC
genomic: GGAGCTCCTTTATCTGGAGATTCGCAACACTTCATCAATATCTGCATGGGgtaatgattc ... ttgttgatagGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacaccttttattatccatttagtgttgaagttctctatatttacttgttgatagGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTT
tttactt CT-rich tract
ttttattatccattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatacaggaagagtttcactgtcccggagttgataaatttgatttacaccttttattatccatttagtgttgaagttctctatatttacttgttgatagGGCTCCTATTGGGCAAGGATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTT
- - - - - - - - - -ctgtccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa