1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gttttggtaattttctgatttacatactctttacaactgaggctacttttggttcttggtaacaaatcatggacaagtgggttaaattcttttattgcagGGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCACGCATAACCACCAT
species | Glycine max |
transcript | GLYMA19G45130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCAAGGACTGGGTGTTGACTTTCTTAATCTTTCTACTCTCTCCACATT GGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTCEST: gi|20814831|gb|BQ299309.1|BQ299309
genomic: CAGCAAGGACTGGGTGTTGACTTTCTTAATCTTTCTACTCTCTCCACATTgtgagatttc ... tttattgcagGGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTC
EST: CAGCAAGGACTGGGTGTTGACTTTCTTAATCTTTCTACTCTCTCCACATT GGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTC
genomic: CAGCAAGGACTGGGTGTTGACTTTCTTAATCTTTCTACTCTCTCCACATTgtgagatttc ... tttattgcagGGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTC
cttttggttcttggtaacaaatcatggacaagtgggttaaattcttttattgcagGGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCACGCATAACCACCAT
tggtaac putative branch site (score: 2)
ttcttttatt putative PPT
ttaaattcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttggtaattttctgatttacatactctttacaactgaggctacttttggttcttggtaacaaatcatggacaagtgggttaaattcttttattgcagGGATCTCTCTTTCAATTTTCTAACAGGTGACCTCCCTCAGACTATGAGCTCACTTTCACGCATAACCACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - catactc
- - - - - - - - - - - - - - - - -caactga
- - - - - - - - - - - - - - - - - - - - - - - - - -gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtt