Sequence
atgc intronic sequence ATGC exonic sequence...atgttagttaaattggtggaacgtggaacaacttccttcctcttcctttatagtaatttgcttgatggaataatggtagctgcttttatccttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTCATCCTTGTCAGAAATGCCAGTGAGTCCGACATCAGTAGCATCCAATGGT
Basic information
| species | Glycine max |
| transcript | GLYMA19G44420.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G44420.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 6
atgttagttaaattggtggaacgtggaac-aacttccttcctcttcctttatagta-atttgcttgatgg---aataatggtagctgcttttatccttcttgaagTATGGTGATGGAC-----CACAGT-------GCTCCTGTTATTCCACCAAATAGTGCGATGTCATCCTTGTCAGAAATGCCAGTGAGTCCGACATCAGTAGCATCCAATGGT
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atgtt-gctaa--tgg--aaacgtaatcctggtttttcttaacatgttttatgttttgcttccttgaagttctgctaatggcaattgttttttttgtttttgaagTATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAGCAGTGCCATGTCATCCATGTCAGAGATGCCTGTTAGTCCTACTTCAGTT------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151400669|gb|EV270483.1|EV270483EST: GGGGTCCTGGCATCAAGCAACTCCCATCCCATTAGAATTTCCGGGAATGG TATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTC
genomic: GGAGTCCTGGCATCAAGCAACTCCCATCCCATTAGAATTTCCGGGAATGGgtgagaactt ... cttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttatagtaatttgcttgatggaataatggtagctgcttttatccttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTCATCCTTGTCAGAAATGCCAGTGAGTCCGACATCAGTAGCATCCAATGGT
gcttgat putative branch site (score: 5)
ctgcttttatccttct putative PPT
tagtaattt TA-rich tract
