1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attttcatatcgtatatgaacagttgctccataagattcttttgtcttaaaatgaacagtaacgctcagaaacatacttgggtttgtttttcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGACTTCACGAACAACTTGAG
species | Glycine max |
transcript | GLYMA19G43690.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAGAAC GAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGEST: gi|192303317|gb|FG997403.1|FG997403
genomic: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAACgtgagttctc ... tcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCG
EST: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC GAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGGGEST: gi|254338680|gb|GR849991.1|GR849991
genomic: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAACgtgagttctc ... tcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCG
EST: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC GAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCCAGAAGCEST: gi|192303316|gb|FG997402.1|FG997402
genomic: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAACgtgagttctc ... tcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACT-CCAGAAGC
EST: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC GAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGEST: gi|15200128|gb|BI424187.1|BI424187
genomic: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAACgtgagttctc ... tcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCG
EST: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC GAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCG
genomic: GAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAACgtgagttctc ... tcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCG
cttaaaatgaacagtaacgctcagaaacatacttgggtttgtttttcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGACTTCACGAACAACTTGAG
cagtaac putative branch site (score: 2)
tttgtttttcttttgc putative PPT
tttgtttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcatatcgtatatgaacagttgctccataagattcttttgtcttaaaatgaacagtaacgctcagaaacatacttgggtttgtttttcttttgcagGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGACTTCACGAACAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC