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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaaaattacttttattgttttggtactctatccccatgacttgtatattgcagaatggaatttaagattgataatttgacttgtttatgtggcagGCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA

Basic information

species Glycine max
transcript GLYMA19G43210.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43210.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 6
gttggaaaattacttttattgttttggtactctatccccatgacttgtatattgcagaatggaatttaagattgataatttgacttgtttatgtggcagGCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA
||   || || |  |   ||    |  |  | | |     | | |  |  |||      |    |     | |||    | ||  | | | | || ||| ||| ||||| || || ||||||||||| ||||  |||| ||| |||||||| || || ||||||||||||||||| ||||| || ||||| || || ||
gtcaaaagatcatctccttttgcctttttttttttttttgttattgtttgatt------ttccttcctcaaatgaagcatggaactctctctttg-cagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534339|gb|EH262472.1|EH262472
EST:     GAAAGATGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAG                         GCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCAT
genomic: GAAAGATGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGgttggaaaat ... tatgtggcagGCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatattgcagaatggaatttaagattgataatttgacttgtttatgtggcagGCCATATTCGGAATATTTATTTCCCATTTGACACAGAGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA
                                 atttgac  putative branch site (score: 4)
                                       cttgttt  CT-rich tract
                  aatttaagattgataa  TA-rich tract