1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttttctattttacttatctggtcaaaaactgcttagttcaaaccctggagattcatgactgttaggcagcaactacttactgaaagtgtttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG
species | Glycine max |
transcript | GLYMA19G41420.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCGNTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA GTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAEST: gi|15286620|gb|BI470511.1|BI470511
genomic: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAgtatgttttc ... ttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAA
EST: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA GTTAATCCACATACTCACCAGGTCAAAAEST: gi|208213207|gb|GE010572.1|GE010572
genomic: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAgtatgttttc ... ttctatgcagGTTAATCCACATACTCACCAGGTCAAAA
EST: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA GTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAEST: gi|6963904|gb|AW432597.1|AW432597
genomic: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAgtatgttttc ... ttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCA
EST: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA GTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAEST: gi|15814589|gb|BI786864.1|BI786864
genomic: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAgtatgttttc ... ttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAA
EST: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA GTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAA
genomic: ATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAgtatgttttc ... ttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAA
ctggagattcatgactgttaggcagcaactacttactgaaagtgtttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG
tacttac putative branch site (score: 1)
tgtttct putative PPT
tttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttctattttacttatctggtcaaaaactgcttagttcaaaccctggagattcatgactgttaggcagcaactacttactgaaagtgtttctatgcagGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG