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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattattcttgaatcctgatcgaaaagcattacttcaaatctaaatcctcaatagcattggttccatattcataaacttaccaaataaatttgaaacatgctacgttctaaatcctaactagGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGG

Basic information

species Glycine max
transcript GLYMA19G40050.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G02260.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacttattattcttgaatcctgatcgaaaagcattacttcaaatctaaatcctcaatagcattggttccatattcataaacttaccaaataaatttgaaacatgctacgttctaaatcctaactagGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGG
|| ||   |||   ||  | ||      | |  |||  | | |  |||     |  |  | |     ||||   |      ||   | |  || ||    |  |   |   | |   |||  | |||||||| |||||||||||||| |||| ||| |  |||| |||  |  | |||||||| |||||||| ||| | ||||| ||||||||||| |||||||| |
gt-ctgcctatctgtgtttgct------acaatatttttcctatccta----ttatagggaaagaactccacgcttc----ctgtgcgatgaagttcattatttataaaagtttttttccctattagGTGTCAAAACTGGGAAAGTTAAAGTGTAAAACGGAAAGTGAAACAATACAAGATGTAAAAGCAGATGATTTGCGGCAGATGTTTCTGGCGATGACAGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcataaacttaccaaataaatttgaaacatgctacgttctaaatcctaactagGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGG
                                      ttctaaa  putative branch site (score: 2)
               aaataaatttgaaaca  TA-rich tract