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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatttctcttttaatatggtttaaaaatgtttattttttaatgaactgtaaatccatgtgacagtcagaagatgtaaattttctgtgttttgttgtaacagTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAG

Basic information

species Glycine max
transcript GLYMA19G39080.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0319g00060.t01 (Vitis vinifera), 3'ss of exon 5
gttagatttct---cttttaatatggtttaaaaatgtttattttttaatgaact--gtaaatccatgtgaca--gtca-------gaagatgta-aattttctgtgttttgttgtaacagTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAG
||||| ||  |   ||| || ||||  ||    |     |||| |  |||||||  | |||||  ||   ||  ||||        |   |  | | |||||||| ||||  ||   ||||  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||  | ||   | |  | |||  |
gttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcagTAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACATAGAACAATTATGG

upper sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 6
gttagatttct---cttttaatatggtttaaaaatgtttattttttaatgaact--gtaaatccatgtgaca--gtca-------gaagatgta-aattttctgtgttttgttgtaacagTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAG
||||| ||  |   ||| || ||||  ||    |     |||| |  |||||||  | |||||  ||   ||  ||||        |   |  | | |||||||| ||||  ||   ||||  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||  | ||  || |  | |||  |
gttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcagTAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGT--CTTACACAGAACAATTATGG

upper sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 6
gttagatttct---cttttaatatggtttaaaaatgtttattttttaatgaact--gtaaatccatgtgaca--gtca-------gaagatgta-aattttctgtgttttgttgtaacagTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAG
||||| ||  |   ||| ||  |||  ||    |     |||| |  |||||||  | |||||  ||   ||  ||||        |   |  | | |||||||| ||||   |   ||||  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||  | ||  || |  | |||  |
gttagcttcttttccttctaggatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttaccgcctcagTAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaatccatgtgacagtcagaagatgtaaattttctgtgttttgttgtaacagTTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAG
                                         ttttgtt  CT-rich tract
                      aagatgtaaatttt  TA-rich tract