1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtcttgacgaaaaagttaacaacatttgagttgttgactattaattatattactttatatattatgcatgttgtgctgaaataactgagtttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG
species | Glycine max |
transcript | GLYMA19G38690.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCC TTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACEST: gi|254318650|gb|GR828594.1|GR828594
genomic: AGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCgtaagcacac ... ttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAAC
EST: AGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCC TTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACEST: gi|17152797|gb|BM142730.1|BM142730
genomic: AGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCgtaagcacac ... ttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAAC
EST: AGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCC TTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAAC
genomic: AGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCgtaagcacac ... ttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAAC
tatattactttatatattatgcatgttgtgctgaaataactgagtttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG
aaataac putative branch site (score: 2)
tactttatatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgacgaaaaagttaacaacatttgagttgttgactattaattatattactttatatattatgcatgttgtgctgaaataactgagtttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG
- - - - gaaaaag
- - - - - - - - -aacaaca
- - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa