Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatccttaattggtctttaaagttcatacatgtgaaattcagcatacttctttcattaataagcccttatatcatatgtaaataaaaagttgaacatattgtggtttcaacttcctcttttttcctctgtttgacaactgtaaatttttatcctattggcagtctttaaatgttctagttttgacttaacagAATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAG

Basic information

species Glycine max
transcript GLYMA19G37750.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37750.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgttatccttaattggtctttaaagttcatacatgtgaaattcagcatacttctttcattaataagcccttatatcatatgtaaataaaaagttgaacatattgtggtttcaacttcctcttttttcctctgtttgacaactgtaaatttttatcctattggcagtctttaaatgttctagttttgacttaacagAATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAG
                                                                                       ||       |||  |  ||| |       |||   |||  |   |   ||||| |  || ||  |  |    | |   || |  ||   |  || | | |    || |||||||||||||||||| ||||||||||| ||||| |||||    |||||||| ||  ||||||| ||||| || || || |||
-------------------------------------------------------------------------------------gtatggcctactgactactttgcgtaaatttcttatgcttggtatattcatttgagatttgaaatctactgaattctgaccaatgattctctcatcaaatct----ttgacagAATGAATTTGGTGTTTGGGAGATCTTTTTGCCCAACAACACTGATGGTTCGCCTGCAATTCCTCATGGCTCACGTGTAAAG

upper sequence: GLYMA19G37750.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgttatccttaattggtctttaaagttcatacatgtgaaattcag-catacttctttcattaataagcccttatatcat-atgtaaataaaaagttgaacatattgtggtttcaacttcctcttttttcctctgtttgacaactgtaaatttttatcctattggcagtctttaaatgttctagttttgacttaacagAATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAG
||||| |  |      |  | | | |  |  ||   | | |  ||| | | ||  |  |   ||    ||   ||| ||  | |  | ||    || |   || | |||  |  |    | |    || ||  ||||||   |       |||| | |||  |  | | |||||  ||    ||  | ||   | | ||||| || |||||||||||||| || ||  ||||||| ||||  ||||| |||||| ||||||||||||| || || || |||
gtatgctcacacactctaatttgtga--tctat-tgtttaatcttccgtcttagcttataatttggctagaagttaaatttttacttgaaccttaaatgatacttgttggcgcatgctttgctctgttattattctgttc--ctttctggaattctgatctaa--gactgtcttacaa----ctgatatt---tgagcagAACGACTTTGGTGTGTGGGAAATATTTCTGCCAAATAATGCTGATGGCTCACCAGCAATTCCCCATGGCTCCCGTGTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaaatttttatcctattggcagtctttaaatgttctagttttgacttaacagAATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAG
                                         ttttgac  putative branch site (score: 3)
     aatttttatcctatt  TA-rich tract