Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataagtttatttatttttttccttgaattatcaggaatatatgcaggagcaggacaaaatttgttgactacttttgctccaaattcatatgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATAAACACGTTTGTGTTTTATTGCATTGTAT

Basic information

species Glycine max
transcript GLYMA19G37480.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37480.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 6
gtatataagtttatttatttttttccttgaattatcaggaatatatgcaggagcaggacaaaatttgttgactacttttgctccaaattcatatgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATAAACACGTTTGTGTTTTATTGCATTGTAT
             |   | || || |||||  |         | ||| |     || ||  ||  | | |   | |    ||||   ||  | |||   | ||||  | ||||||||||||| |||||||||||| | ||||||||||||||||||||| | ||| ||||| | ||||| |||||   ||| ||||| ||||| ||  | ||| 
------------gtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaacctaaaatctaggtgattaactctccctttttct-tgt---taatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatttgttgactacttttgctccaaattcatatgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATAAACACGTTTGTGTTTTATTGCATTGTAT
      tgttgac  putative branch site (score: 3)
                         aaattcatatgtat  TA-rich tract